Re: [Freesurfer] DOSS FS 5.3

2013-10-17 Thread amirhossein manzouri
Thanks for the reply. Would you please let me know if it is possible to calculate the power for a group comparison in cortical thickness? Also, a referee is requesting F-values, are they generated by q-dec? Thanks in advance, On Wed, Oct 16, 2013 at 5:51 PM, Douglas N Greve

[Freesurfer] DOSS FS 5.3

2013-10-16 Thread amirhossein manzouri
Dear Experts, Hi, I have already done my data analysis having group as fixed factor and age as nuisance factor in QDEC FS 5.3. I also need to run it with DOSS. Would you please advise how to run the same analysis with DOSS from terminal and if it is possible to look at the results in QDEC Display

Re: [Freesurfer] DOSS FS 5.3

2013-10-16 Thread Douglas N Greve
From the command line you will need to run mri_glmfit. The mri_glmfit.log file in the QDEC output folder will have a sample mri_glmfit command line. You will need to modify this by adding doss after the FSGD file. You will also need to create new contrast matrices to match the DOSS model.