Re: [Freesurfer] Error with mri_convert failing to write orig/001.mgz

2008-10-23 Thread John Sheppard
Hey Krish, Thanks for your input. Good idea too, never thought about doing that. Tried this in command line and worked without a hitch. Then i realized if you just use command line what I did before works as well. The error must somehow be resulting from issues with tcsh or something. But I

Re: [Freesurfer] Error with mri_convert failing to write orig/001.mgz

2008-10-23 Thread John Sheppard
Also, in case anyone is interested -- if you have a brik volume in the subject folder, specifying mri/orig/001.mgz gives the same error as specifying orig/001.mgz, at least for me. So that wasn't the cause of the problem. John On Thu, Oct 23, 2008 at 7:44 AM, John Sheppard [EMAIL PROTECTED]

Re: [Freesurfer] Error with mri_convert failing to write orig/001.mgz

2008-10-22 Thread Bruce Fischl
Hi John, can you send us the command line you are running? cheers, Bruce On Wed, 22 Oct 2008, John Sheppard wrote: Hey everyone, I'm having some issues trying to run the volume pipeline using .BRIK input from afni (hence running mri_convert command directly). The problem occurs at the end