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*Subject: * Re: [Freesurfer] Extracting brain volume seperately
everything except skull and scalp are in the aseg.stats file. You can
get skull by running samseg, eg,
cd subject/mri
samseg --i orig.mgz --o samseg
there will be a stats file in the samseg folder with skull volume in it
On 2
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Hi Douglas,
Thank you for your reply. I'm a beginner in freesurfer and my previous
statement was not very clear. My purpose is to generate new .mgz files (e.g.,
scalp.mgz and CSF.mgz, etc.)that are not in the MRI folder.
Bset regards,
Yichuan
everything except skull and scalp are in the aseg.stats file. You can
get skull by running samseg, eg,
cd subject/mri
samseg --i orig.mgz --o samseg
there will be a stats file in the samseg folder with skull volume in it
On 2/1/2023 5:00 AM, 江一川(JIANG Yichuan) wrote:
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Dear Experts,
How can I extract scalp, skull, csf, gray, and white volume, seperately.
Best wishes,Yichuan Jiang___
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