Re: [Freesurfer] FS-FAST: cluster size from 1st level analysis

2019-10-16 Thread Keri Woods
External Email - Use Caution Thanks. On Tue, Oct 15, 2019 at 5:00 PM Greve, Douglas N.,Ph.D. < dgr...@mgh.harvard.edu> wrote: > Correct > > On 10/15/2019 9:38 AM, Keri Woods wrote: > > External Email - Use Caution > Hi Doug > > Thank you very much for the very helpful

Re: [Freesurfer] FS-FAST: cluster size from 1st level analysis

2019-10-15 Thread Greve, Douglas N.,Ph.D.
Correct On 10/15/2019 9:38 AM, Keri Woods wrote: External Email - Use Caution Hi Doug Thank you very much for the very helpful reply! It worked perfectly and was exactly what I needed. I assume that these are the clusters after cluster-level correction for multiple comparison since

Re: [Freesurfer] FS-FAST: cluster size from 1st level analysis

2019-10-15 Thread Keri Woods
External Email - Use Caution Hi Doug Thank you very much for the very helpful reply! It worked perfectly and was exactly what I needed. I assume that these are the clusters after cluster-level correction for multiple comparison since --csd is used? Thanks, Keri On Tue, Oct 15,

Re: [Freesurfer] FS-FAST: cluster size from 1st level analysis

2019-10-14 Thread Greve, Douglas N.,Ph.D.
Sorry for the delay ... First, run selxavg3-sess with -fwhm ( you might need to delete the bold/analysis folder to get it to re-run). cd session/bold/analyis There will be a filed called fwhm.dat. Look in that. Depending upon how much you smoothed it might be something like 10.395. This is the

[Freesurfer] FS-FAST: cluster size from 1st level analysis

2019-10-03 Thread Keri Woods
External Email - Use Caution Hi From the 1st level analysis of an fMRI study I'm trying to extract the size of the clusters of activation from each subject, but don't know how to go about this. I know that for the group analysis you can get the cluster sizes from the output from