From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve
[gr...@nmr.mgh.harvard.edu]
Sent: 02 April 2014 22:35
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] FW: registration difficulty
should I now rerun the bbregsiter
: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve
[gr...@nmr.mgh.harvard.edu]
Sent: 02 April 2014 22:35
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] FW: registration difficulty
should I now rerun the bbregsiter and create
...@nmr.mgh.harvard.edu] on behalf of Erik O'Hanlon
[erikohan...@rcsi.ie]
Sent: 03 April 2014 10:23
To: Freesurfer support list
Subject: Re: [Freesurfer] FW: registration difficulty
Hi Doug,
Thanks for that, I will give that a shot and see how it looks.
As for my highres hippo images, I ran
Dear FS experts,
I am running my first FS analysis and I'm trying to register my hippocampal
subdivision volumes to my diffusion space image but cannot get good alignment.
I ran my diffusion preprocessing in ExploreDTI so don't have the register.dat
file automatically so created this using
Hi Erik
so you had a separate (presumably highres) acquisition within the
hippocampus? Have you registered that with bbregister? Your best bet is
probably doing so, then composing the two registrations (and inverting one,
depending on what direction you want to go).
cheers
Bruce
On Wed, 2
MAKE A DIFFERENCE WORLDWIDE
From: Bruce Fischl [fis...@nmr.mgh.harvard.edu]
Sent: 02 April 2014 19:58
To: Erik O'Hanlon
Subject: Re: [Freesurfer] FW: registration difficulty
Hi Erik
can you cc the list so that others (like Doug!) can respond?
thanks
Bruce
If that is the situation, then you can use the --int flag to bbregister
On 04/02/2014 12:19 PM, Bruce Fischl wrote:
Hi Erik
so you had a separate (presumably highres) acquisition within the
hippocampus? Have you registered that with bbregister? Your best bet is
probably doing so, then
Subject: Re: [Freesurfer] FW: registration difficulty
Hi Erik
can you cc the list so that others (like Doug!) can respond?
thanks
Bruce
On Wed, 2 Apr
2014, Erik O'Hanlon wrote:
Hi Bruce,
Thanks so much for your reply. As for the specifics of what I have tried, so
rry if it was unclear.
I