Re: [Freesurfer] FreeSurfer 5.2 TRACULA and FSL 5

2013-03-06 Thread Anastasia Yendiki
Hi Sean - Thanks for trying out the new version! From what I've seen, the file $FSLDIR/etc/fslversion exists in FSL 5 as well. Does it exist in your distribution? a.y On Wed, 6 Mar 2013, Sean Hatton wrote: Hi all, I have installed FreeSurfer 5.2 to take advantage of improvements in

Re: [Freesurfer] FreeSurfer 5.2 TRACULA and FSL 5

2013-03-06 Thread Anastasia Yendiki
Hi Sean - This works on our redhat centos 4 and centos 6. I can dig around some more, but it'll have to wait for Monday b/c I'll be out of the office the next couple of days. As for your other question, the symlink part has been moved to the -prep step, specifically to make it easier to then

[Freesurfer] FreeSurfer 5.2 TRACULA and FSL 5

2013-03-05 Thread Sean Hatton
Hi all, I have installed FreeSurfer 5.2 to take advantage of improvements in TRACULA. When I run trac-all -bedp I get an error: .../freesurfer/bin/bedpostx_mgh: Syntax error: ( unexpected Looking at the programming it is faulting on line 131 where it is checking the FSL version.