I'm not sure if "mri_convert *junc.mnc* junk.mgh" was a typo, however, I
tried both (junc.mnc, and junk.mnc), and there were errors on both.
You're right, I got the same error (using junk.mnc). I'm going to downgrade
and see if that helps.
On Tue, Feb 7, 2017 at 7:43 PM, Douglas Greve
It may be the version of minc you are using. On our system, we use version 1.5,
but it seems to work with 2.2. I don't have access to 2.3. Can you try this
mri_convert orig.mgz orig.nii
nii2mnc orig.nii junk.mnc
mri_convert junc.mnc junk.mgh
I'm thinking that the last command will fail
On
Thanks for getting back to me.
I ran that command from the $SUBJECTS_DIR/TEST01/mri folder and this is the
output:
*-rw-rw-r-- 1 root 1590 31M Feb 7 10:14
> ./tmp.mri_nu_correct.mni.30405/nu1.mnc*
I do have multiple disks mounted on the server, but they all have more than
enough space. The
not sure what is going wrong here. For some reason mri_convert does not
think that the mnc file is a minc file. Can you verify that you did not
run out of space on that disk? Can you send the result of
ls -l ./tmp.mri_nu_correct.mni.30405/nu1.mnc
On 2/7/17 2:59 PM, Muhammad Khan wrote:
