Re: [Freesurfer] Freesurfer 7.1 recon-all -long exits with erros

2021-03-22 Thread Yakupov, Renat /DZNE
gards, Renat. From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Greve Sent: Friday, March 19, 2021 5:13 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Freesurfer 7.1 recon-all -long exits with erros fs_time will not affect any proce

Re: [Freesurfer] Freesurfer 7.1 recon-all -long exits with erros

2021-03-19 Thread Douglas N. Greve
fs_time will not affect any processing, so you could replace it with a stub. But why do you think it is fs_time? On 3/19/2021 10:54 AM, Yakupov, Renat /DZNE wrote: External Email - Use Caution Dear Freesurfer developers, I am trying to run the longitudinal processing pipeline of

[Freesurfer] Freesurfer 7.1 recon-all -long exits with erros

2021-03-19 Thread Yakupov, Renat /DZNE
External Email - Use Caution Dear Freesurfer developers, I am trying to run the longitudinal processing pipeline of our data on our HPC cluster (SGE based) and it crashes at the 3rd step - generating the longitudinal runs. The exact command is 'recon-all -long tp1dir basedir