Re: [Freesurfer] Freesurfer Digest, Vol 135, Issue 26

2015-05-19 Thread nellie
Dear Lee,Greatly appreciate for your advice. But I not sure whether it is the reason for the comand killed. Actually, I had used the method, useing the -i flag for each .dcm file for your training data of “014-anon” and then running the comand “recon-all -s 014-anon -all”, to get a final

Re: [Freesurfer] Freesurfer Digest, Vol 135, Issue 26

2015-05-19 Thread Bruce Fischl
Hi Amolie you only want a single -i dicom file for each entire T1-weighted run that you acquired, NOT for every file in that run. Thus if you got a single 8-minute scan you should only have one -i on your recon-all command line cheers Bruce On Tue, 19 May 2015, nellie wrote: Dear Lee,