Great!
Thanks so much!
Mona
Zahra (Mona) Nasiriavanaki, M.D.
Postdoctoral Research Fellow
Department of Psychiatry | MGH/HMS
149 13th Street, 149-2615
Boston, MA, USA, 02129
On Jul 22, 2021, at 4:54 PM, Wang, Ruopeng
mailto:rwa...@mgh.harvard.edu>> wrote:
Hi Mona,
The neg.label file has all n
Hi Mona,
The neg.label file has all negative scalar values in it, where the default
threshold for the label is set to 0. If you set the threshold to a big negative
number it will show up.
Best,
Ruopeng
On Jul 22, 2021, at 3:35 PM, Nasiriavanaki, Zahra,M.D.
mailto:znasiriavan...@mgh.harvard.ed
Hello experts,
I am trying to load two types of labels on left hemisphere of a single subject.
In tksurfer, both labels load without an issue, but in Freeview, one type of
labels (neg.label) don’t show up. There is no error in the terminal, so I’m not
sure what’s going on.
I copied the labels a
yes, that is correct
On 12/4/2019 5:30 AM, Ferraro, Pilar wrote:
> External Email - Use Caution
>
> Yes, absolutely, this should work! Many Thanks!
> I have just one last question concerning the colors in FreeView.
> I have a fsgd file with class 1 (patients) coming first and then class 0
External Email - Use Caution
Yes, absolutely, this should work! Many Thanks!
I have just one last question concerning the colors in FreeView.
I have a fsgd file with class 1 (patients) coming first and then class 0 (hc)
after.
The contrast matrix is 1 -1 0.
Among the results I see
Yes, that worked Thank you.
> Have you tried rebooting your computer?
>
> Best,
> Ruopeng
>
>> On Jul 12, 2016, at 3:14 PM, pfot...@nmr.mgh.harvard.edu wrote:
>>
>> Hello FS Community,
>> Lately, whenever I am trying to use freeview I get the following error
>> message:
>>
>> freeview.bin: err
Have you tried rebooting your computer?
Best,
Ruopeng
> On Jul 12, 2016, at 3:14 PM, pfot...@nmr.mgh.harvard.edu wrote:
>
> Hello FS Community,
> Lately, whenever I am trying to use freeview I get the following error
> message:
>
> freeview.bin: error while loading shared libraries: libvtkverdi
Hello FS Community,
Lately, whenever I am trying to use freeview I get the following error
message:
freeview.bin: error while loading shared libraries: libvtkverdict.so.5.6:
cannot open shared object file: No such file or directory
Exit 127
The error started showing up after the cluster went down
To: Freesurfer support list
Subject: Re: [Freesurfer] Freeview question: using "line profile"
I think you need to create 2 sets of way points as iso-lines. You can do that
from File -> New Point Set and select 'way point'. Then you should be able to
use the line profile too
I think you need to create 2 sets of way points as iso-lines. You can do
that from File -> New Point Set and select 'way point'. Then you should
be able to use the line profile tool.
On 01/14/2015 04:55 PM, Albrecht, Daniel S. wrote:
Hello,
I'm having trouble using the "line profile" tool in
Hi Dan,
for the line profile you'd select a few points along one curve (e.g.
along the pial surface in a slice) , then along the opposite curve (e.g.
along the wm surface) and you can then compute line profiles connecting
the two curves (via solution of a poisson equation). the tool samples
t
Hello,
I'm having trouble using the "line profile" tool in FreeView. I have a PET
image overlaid on an MR image, and would like to view a line profile of a
rectangular ROI on the PET image. I assumed that the "line profile" selection
in "Tools" would be able to do this, but I haven't been able
Thanks Bruce.
On Fri, Dec 6, 2013 at 2:51 PM, Bruce Fischl wrote:
> Hi Alan
>
> yes, this one:
>
> https://surfer.nmr.mgh.harvard.edu/ftp/articles/fischl02-labeling.pdf
>
> although it is based on the CMA manual definitions
>
> cheers
> Bruce
>
> On Fri, 6 Dec 2013, Alan Francis wrote:
>
> Than
Hi Alan
yes, this one:
https://surfer.nmr.mgh.harvard.edu/ftp/articles/fischl02-labeling.pdf
although it is based on the CMA manual definitions
cheers
Bruce
On
Fri, 6 Dec 2013, Alan Francis wrote:
Thanks Louis and Bruce. One more question: Is there any paper that outlines
the boundaries of
Thanks Louis and Bruce. One more question: Is there any paper that outlines
the boundaries of the FreeSurfer version of the Hippocampus.
thanks so much,
Alan
On Thu, Dec 5, 2013 at 3:49 PM, Louis Nicholas Vinke <
vi...@nmr.mgh.harvard.edu> wrote:
> Hi Alan,
> You can use mri_binarize to pull i
sure. Use mri_extract_label or mri_binarize to create a volume with only
the hippocampal label in it and load that
cheers
Bruce
On Thu, 5 Dec 2013, Alan Francis
wrote:
> Hi Bruce et al,
>
> Is it possible to load just the Hippocampal mask/ROI from the ASEG onto a
> brain in Freeview?
>
> than
Hi Alan,
You can use mri_binarize to pull it out of the aseg.mgz. FYI: Once loaded
into freeview you can also generate an isosurface for the hippocampus
label in the 3D view.
-Louis
On Thu, 5 Dec 2013, Alan Francis wrote:
> Hi Bruce et al,
>
> Is it possible to load just the Hippocampal mask/
Hi Bruce et al,
Is it possible to load just the Hippocampal mask/ROI from the ASEG onto a
brain in Freeview?
thanks,
Alan
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