Re: [Freesurfer] Fwd: LGI path problem

2013-10-28 Thread Linn Mittlestein
Dear Marie, Thank you, I use bash and changed my .bashrc and this worked, I previously had used wrong syntax. Thank you very much for your help. However, I now recieve another error and do not know what it means at all. I copy in the error ! Thank you. Improper assignment with rectangular empty

Re: [Freesurfer] Fwd: LGI path problem

2013-10-23 Thread Linn Mittlestein
Hi, thank you. I am using Linux. I not sure where to change path, ie which file this should be done in and where this file is located. This the error message I recieve, and as I said It is launching the wrong matlab and I don't know how change this. Launching Matlab7p13 Warning: Unable to open

Re: [Freesurfer] Fwd: LGI path problem

2013-10-23 Thread Marie Schaer
Hi Linn, If you are using tcsh, you have to edit the file $HOME/.cshrc (.shrc should work as well) to add the following line: setenv PATH $PATH:/YOUR_PATH_TO_MATLAB_BIN_DIRECTORY Then close the terminal and open a new one. Use the env command to be sure that your path has been modified, then

Re: [Freesurfer] Fwd: LGI path problem

2013-10-22 Thread Marie Schaer
Hi Linn, Sorry for the delay in answering. The path has to be set directly in your environment variable (the variable $PATH has to point to the correct version). I need a few more details about what you tried and which OS you are using to be able to help you. If you are using mac, here is an

[Freesurfer] Fwd: LGI path problem

2013-10-21 Thread Linn Mittlestein
From: Linn Mittlestein linnmit...@gmail.comDate: Fri, Oct 18, 2013 at 1:30 PM Subject: LGI path problem To: freesurfer@nmr.mgh.harvard.edu Hi, I am trying to compute lgi measures, and I think my problem lies in the fact that the matlab path is not set correctly; it is calling an older version