Re: [Freesurfer] Fwd: running cross sectional analysis on .long outputs only

Thank you kindly Martin, saved me a lot of trouble and time starting from scratch! On Wed, Oct 18, 2017 at 9:45 AM, Martin Reuter wrote: > Hi Garret, > > sure, there is no need to run qcache at all. Assuming you do a thickness > analysis, you can directly use

Re: [Freesurfer] Fwd: running cross sectional analysis on .long outputs only

Hi Garret, sure, there is no need to run qcache at all. Assuming you do a thickness analysis, you can directly use mris_preproc to register all thickness maps from only the first time point to fsaverage and smooth them (there you need to pass a list of only the first longidutinal time points:

[Freesurfer] Fwd: running cross sectional analysis on .long outputs only

Hello FreeSurfer experts, I am trying to do a cross-sectional baseline analysis from the outputs of the longitudinal processing stream, following the advice on a previous question's thread: https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2016- March/044681.html >From my reading of the