Re: [Freesurfer] How TE, TI and flip angle parameters affect the images and results?

2012-08-18 Thread Andre van der Kouwe
Hi Daniel, I agree, those flip angle differences are quite big and would make a difference to contrast. I suspect gray/white contrast is better for the higher TI and lower flip angles in those scans (and they could benefit from longer TR). So if you have a balanced study/control group it's ok

[Freesurfer] How TE, TI and flip angle parameters affect the images and results?

2012-08-17 Thread Daniel Ferreira
Dear all, We are designing a study based on clinical data. We want to work with a MPRAGE sequence but subjects have been given 4 different sets of parameters: - TR: 1900; TE: 4,38; TI: 1100; flip angle: 15 - TR: 1900; TE: 3,55; TI: 1100; flip angle: 15 - TR: 1900; TE: 3,39; TI: 900; flip angle:

Re: [Freesurfer] How TE, TI and flip angle parameters affect the images and results?

2012-08-17 Thread Bruce Fischl
Hi Daniel those are pretty big differences in flip angle. I'll cc Andre van der Kouwe on this so he can comment, but I would be hesitant. The increased TE will have a big effect on dura (darkening it), but will also reduce gray/white contrast. cheers Bruce On Fri, 17 Aug 2012, Daniel