, 2014 4:53 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Preprocessing Error
Is the size of the volume (row, cols, or slices) changing between the runs?
On 07/30/2014 04:18 PM, bbr...@bidmc.harvard.edu wrote:
Hi Doug,
I have been getting an error message when preprocessing
...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve
[gr...@nmr.mgh.harvard.edu]
Sent: Wednesday, July 30, 2014 4:53 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Preprocessing Error
Is the size of the volume (row, cols, or slices
Joe,
This error appears when a binary built on CentOS 6 is run on an OS with an
older glibc, like CentOS 4/5. Fsl no longer builds on 4/5 so that is why this
appeared for you recently. Update to CentOS 6 if you are at the nmr center or
use the fsl by doing this
setenv FSL_DIR
Hello,
I was attempting to preprocess a scan earlier and I got an error which
seems to indicate a problem with the version of FSL:
From this command:
preproc-sess -s nmasa_016_130111 -fsd bold -stc up -surface fsaverage lhrh
-mni305 -fwhm 5 -per-run
I get this error:
#--Using FSL's
what command are you running (I mean the full command line -- hard to
debug without it). The preprocessing should not require matlab. Just
guessing, this does not look like a FS problem.
doug
On 12/11/11 2:34 PM, Maryam Vaziri Pashkam wrote:
Hi,
I am running preprocessing on my data using
Hi,
I am attempting to run the following command:
preproc-sess -s CD_R01BTX_ctrl1_sess1 -df sessdirfile -mcout fmc5 -fwhm 5
-smin fmc5 -smout fmcsm5
and am getting an error:
Tue Jan 27 16:33:44 EST 2009
mcparams2exterg: finished
\n\n
Tue Jan 27 16:33:44 EST 2009
mc-sess completed SUCCESSFULLY
what version of freesurfer?
j...@nmr.mgh.harvard.edu wrote:
Hi,
I am attempting to run the following command:
preproc-sess -s CD_R01BTX_ctrl1_sess1 -df sessdirfile -mcout fmc5 -fwhm 5
-smin fmc5 -smout fmcsm5
and am getting an error:
Tue Jan 27 16:33:44 EST 2009
mcparams2exterg:
Hi,
While attempting to preprocess a subjects data I am given an error message
(pasted below) as the motion correction step is implemented does anyone
have an idea of what the libvnl_algo.so file is and where it may be
located? I am not sure why it cannot be loaded. Thanks in advance for the
help!
I think there is some prbm in dev env?
Cameron Ellis wrote:
Hi,
While attempting to preprocess a subjects data I am given an error message
(pasted below) as the motion correction step is implemented does anyone
have an idea of what the libvnl_algo.so file is and where it may be
located? I am
This error appears if using the 'development' version of Freesurfer
available within the MGH NMR Center. The problem was fixed this
weekend, and you will need to re-'source' your Freesurfer environment.
Also, the 'stable' build is recommended for NMR Center users, unless
there is a specific
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