Re: [Freesurfer] Qdec visualization

2015-12-21 Thread Douglas N Greve
the sample size ( number of > subjects included in the analysis)? > Thanks a lot! > *Sent:* Monday, December 21, 2015 at 2:44 PM > *From:* "Douglas N Greve" > *To:* freesurfer@nmr.mgh.harvard.edu > *Subject:* Re: [Freesurfer] Qdec visualization > it helps to see the err

Re: [Freesurfer] Qdec visualization

2015-12-21 Thread John Anderson
indly > what I am doing wrong? > Bests, > John > *Sent:* Monday, December 21, 2015 at 2:20 PM > *From:* "Douglas N Greve" > *To:* freesurfer@nmr.mgh.harvard.edu > *Subject:* Re: [Freesurfer] Qdec visualization > QDEC cannot but the information may be in the output

Re: [Freesurfer] Qdec visualization

2015-12-21 Thread Douglas N Greve
gt; John > *Sent:* Monday, December 21, 2015 at 2:20 PM > *From:* "Douglas N Greve" > *To:* freesurfer@nmr.mgh.harvard.edu > *Subject:* Re: [Freesurfer] Qdec visualization > QDEC cannot but the information may be in the output folder. There > should be a file called gam

Re: [Freesurfer] Qdec visualization

2015-12-21 Thread John Anderson
  Bests, John Sent: Monday, December 21, 2015 at 2:20 PM From: "Douglas N Greve" To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Qdec visualization QDEC cannot but the information may be in the output folder. There should be a file called gammavar.mgh. This will be the st

Re: [Freesurfer] Qdec visualization

2015-12-21 Thread Douglas N Greve
dec to get the stamdard > error (SE) ? > Bests, > John > *Sent:* Monday, December 21, 2015 at 11:43 AM > *From:* "Douglas N Greve" > *To:* freesurfer@nmr.mgh.harvard.edu > *Subject:* Re: [Freesurfer] Qdec visualization > The correction for multiple comparisons

Re: [Freesurfer] Qdec visualization

2015-12-21 Thread John Anderson
Thanks you very much Doug, Please one more question. Is there any way in Qdec to get the stamdard error (SE) ?   Bests, John      Sent: Monday, December 21, 2015 at 11:43 AM From: "Douglas N Greve" To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Qdec visualization The

Re: [Freesurfer] Qdec visualization

2015-12-21 Thread Douglas N Greve
The correction for multiple comparisons is cluster-based. Each cluster gets a single number. In the display, all the vertices get that same number. On 12/18/2015 03:17 PM, John Anderson wrote: > Hi Freesurfer experts, > I am using Qdec in Freesurfer 5.3 to do some cortical thickness > comparison

[Freesurfer] qdec visualization problems

2013-11-12 Thread Daniel Wakeman
Hi, I am having trouble running qdec over an NX session. I downloaded a FreeSurfer installation (5.3.0) to a network drive (/cluster/neuromind/dwakeman/software/freesurfer/). The installation has no trouble running recon-all; however, when I try to run qdec, I get vtk errors (see below): ERRO