Re: [Freesurfer] Questions regarding recon-all command

2014-07-23 Thread soumyabrata.dey
. From: freesurfer-boun...@nmr.mgh.harvard.edu freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Bruce Fischl fis...@nmr.mgh.harvard.edu Sent: Wednesday, July 23, 2014 2:11 AM To: Freesurfer support list Subject: Re: [Freesurfer] Questions regarding recon-all command Hi Soumya Can you

Re: [Freesurfer] Questions regarding recon-all command

2014-07-23 Thread Bruce Fischl
...@nmr.mgh.harvard.edu Sent: Wednesday, July 23, 2014 2:11 AM To: Freesurfer support list Subject: Re: [Freesurfer] Questions regarding recon-all command   Hi  Soumya Can you include the full command and screen output of what you ran? Are you sure that they are nifti and not analyze? Analyze is to be avoided

[Freesurfer] Questions regarding recon-all command

2014-07-22 Thread soumyabrata.dey
?Hi All, I am new to freeSurfer and need your guidance for some of the doubts I have. I have installed freeSurfer in a windows 7 machine using virtualBox. I am trying to process some of my own sMRI data using freeSurfer software. The data is skull-stripped and has cerebellum. The format of

Re: [Freesurfer] Questions regarding recon-all command

2014-07-22 Thread Bruce Fischl
Hi Soumya Can you include the full command and screen output of what you ran? Are you sure that they are nifti and not analyze? Analyze is to be avoided as it doesn't contain enough information to tell left from right Cheers Bruce On Jul 22, 2014, at 8:01 PM, soumyabrata.dey