Hi,
Ok, I will look into inverting the image as Martin suggested. Is there
some background info available on how to put the segmentation input into
the surface-based analysis. In case the inversion doesn't work. I'm
particularly wondering if I need to have the images in *.mgz file format
or
Hi Mark,
if wm is darker than gm our tools probably will not work. You might try
using the FSL segmentation tools and putting the output of them through our
stream for surface-based analysis.
cheers,
Bruce
On Mon, 20 Oct 2008, Mark Bouts wrote:
Hi,
I'm trying to set up a rat brain
Mark,
once I had a similar problem on an autopsied brain, where it was very
difficult to obtain an MPRAGE-like contrast. So instead, I acquired
T2-weighted and inverted it. This gave me contrast very similar to MPRAGE,
though my analysis failed anyway, due to too strong bias field. So you
