Re: [Freesurfer] Repost | Re: mni152reg error

2014-08-02 Thread jaco...@nmr.mgh.harvard.edu
Good Morning Doug, Thank you for the help, these commands seem to work beautifully! Much appreciated, Jacob Try this: First, compute the registration between the bold and the 152 mri_matrix_multiply -im bold/register.dat -iim mri/transforms/reg.mni152.2mm.dat -om bold-to-mni152.reg.dat

[Freesurfer] Repost | Re: mni152reg error

2014-07-31 Thread jaco...@nmr.mgh.harvard.edu
Hello Doug, Ideally, I am trying to take subject tstat maps from FsFast (stable3 environment) and register these native structural space maps to the MNI152_2mm standard brain. The t_000.bfloat file is what was generated relative to my contrast that was set up in FsFast stable3. There are a

Re: [Freesurfer] Repost | Re: mni152reg error

2014-07-31 Thread Douglas N Greve
Try this: First, compute the registration between the bold and the 152 mri_matrix_multiply -im bold/register.dat -iim mri/transforms/reg.mni152.2mm.dat -om bold-to-mni152.reg.dat Check the reg tkregister2 --mov bold.bhdr --reg bold-to-mni152.reg.dat --targ

[Freesurfer] Repost | Re: mni152reg error

2014-07-21 Thread jaco...@nmr.mgh.harvard.edu
Hello Doug, Ideally, I am trying to take subject tstat maps from FsFast (stable3 environment) and register these native structural space maps to the MNI152_2mm standard brain. The t_000.bfloat file is what was generated relative to my contrast that was set up in FsFast stable3. There are a

Re: [Freesurfer] Repost | Re: mni152reg error

2014-07-21 Thread Bruce Fischl
Hi Jacob Doug is on vacation for a couple of weeks, so you should probably repost in early August. cheers Bruce On Mon, 21 Jul 2014, jaco...@nmr.mgh.harvard.edu wrote: Hello Doug, Ideally, I am trying to take subject tstat maps from FsFast (stable3 environment) and register these native

Re: [Freesurfer] Repost | Re: mni152reg error

2014-07-21 Thread jaco...@nmr.mgh.harvard.edu
Thank you for the heads up Bruce. Hi Jacob Doug is on vacation for a couple of weeks, so you should probably repost in early August. cheers Bruce On Mon, 21 Jul 2014, jaco...@nmr.mgh.harvard.edu wrote: Hello Doug, Ideally, I am trying to take subject tstat maps from FsFast (stable3