Copy the lta to subject/mri/transforms/FLAIRraw.lta (there should be one
there already, just copy over it)
On 4/16/2021 12:19 PM, Edina Szabó wrote:
> External Email - Use Caution > > Hi Douglas, > > Thank you for your
response! I really appreciate it. > > I ran the command – it works if I
External Email - Use Caution
Hi Douglas,
Thank you for your response! I really appreciate it.
I ran the command – it works if I replace --i with --mov.
How can I use the new FLAIRraw.lta to create a new FLAIR-based pial
surface? For example, should I run recon-all -autorecon2
Try this
cd subject/mri
mri_coreg --i orig/T2raw.mgz --targ orig.mgz --reg transforms/T2raw.lta
You can run with multiple threads by adding --threads N
where N is the number of threads
On 3/29/2021 5:18 PM, Edina Szabó wrote:
External Email - Use Caution
Dear All,
We are running
External Email - Use Caution
Dear All,
We are running recon-all on the latest version of FreeSurfer (v7.1.1). We
are using both T1 and FLAIR images to better define the pial surfaces, but
when we run the recommended command line (recon-all -subject subjectname -i
Hi Veronica
it's because you are mixing versions. Can you rerun your subject with
6.0 from scratch?
cheers
Bruce
On Tue, 21 Mar 2017, Veronica Munoz wrote:
Dear all,
I'm trying to add FLAIR data to a subject. I did the first ("classic")
recon-all on a platform so I get the following
Dear all,
I'm trying to add FLAIR data to a subject. I did the first ("classic")
recon-all on a platform so I get the following warnings:
INFO: FreeSurfer build stamps do not match
Subject Stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0
Current Stamp:
