[Freesurfer] TRACULA trac-all -path giving 'Segmentation error (core dumped) error'

2013-02-25 Thread Susan Kuo
Hi FreeSurfer Community, I am trying to run TRACULA's last step, 'trac-all -path -c path-to-dmrirc-config-script', and am receiving the error: Segmentation fault(core dumped) Moreover, when I look to standard output (terminal), I noticed that the initial 'dmri_paths' command is incomplete.

Re: [Freesurfer] TRACULA trac-all -path giving 'Segmentation error (core dumped) error'

2013-02-25 Thread Anastasia Yendiki
Hi Susan - Can you please send your entire trac-all.log? I'll need to see what else was going on before the error message occurred. Thanks, a.y On Mon, 25 Feb 2013, Susan Kuo wrote: Hi FreeSurfer Community,    I am trying to run TRACULA's last step, 'trac-all -path -c

Re: [Freesurfer] TRACULA trac-all -path giving 'Segmentation error (core dumped) error'

2013-02-25 Thread Anastasia Yendiki
It looks to me like there was an error at an earlier stage, in the -prior step, so some of the files that the -path step is looking for are not correct. Look for img2imgcoord: Command not found. That's a command from FSL that it can't find. (The 5.2 version of trac-all will not use this any