Re: [Freesurfer] Tkregister2 / Tksurfer / Tkmedit Won't Open

2013-02-26 Thread Daniel Cole
I was holing out on an analysis before rebooting but that seemed to do the trick! Thanks all! Daniel On Mon, Feb 25, 2013 at 5:58 PM, Nick Schmansky ni...@nmr.mgh.harvard.eduwrote: have you rebooted since installing XQuartz? i've found a reboot is necessary to get Terminal to open up

Re: [Freesurfer] Tkregister2 / Tksurfer / Tkmedit Won't Open

2013-02-26 Thread Nick Schmansky
Daniel, Are you using your Mac to run recon-all? I'm curious about the run-times you are seeing. Others have had very long run times, which I cannot explain. I'd expect about 24 hour runtime, possible half that or less, on a current Macbook Pro. Nick On Tue, 2013-02-26 at 12:51 -0500,

Re: [Freesurfer] Tkregister2 / Tksurfer / Tkmedit Won't Open

2013-02-25 Thread Daniel Cole
Hi Zeke, Thank you for the advice. I have Mac OS X Version 10.7.5. I checked to see if XQuartz is installed and it is. I reinstalled it to be sure but I'm still running into the same problems. Do you (or does anyone else) have other ideas about what could be causing this issue? Thanks, Daniel

Re: [Freesurfer] Tkregister2 / Tksurfer / Tkmedit Won't Open

2013-02-25 Thread Nick Schmansky
have you rebooted since installing XQuartz? i've found a reboot is necessary to get Terminal to open up again. N. On Mon, 2013-02-25 at 17:07 -0500, Daniel Cole wrote: Hi Zeke, Thank you for the advice. I have Mac OS X Version 10.7.5. I checked to see if XQuartz is installed and it is. I

[Freesurfer] Tkregister2 / Tksurfer / Tkmedit Won't Open

2013-02-21 Thread Daniel Cole
Hello freesurfers, I just ran registration of my functional images and am trying to visualize the registration for assessment. However, when I use the commands tkregister-sess -s $SESSIONNAME -d $SESSIONDIRECTORY -fsd bold -funcstem f or tkregister2 --targ T1.mgz --fstarg --s $SUBJECTID --surf