Hi Doug,
After running FSFAST tool and correcting the results for multiple comparisons.
I want t visualize the results using the command line (AS IN WIWKI):
tksurfer fsaverage lh inflated -overlay
my-glm.wls/osgm/cache.th30.pos.sig.cluster.nii.gz -annot
Hi Mohamad
the minmax flags allows you to set the min and max thresholds for the
colorscale in tksurfer. It doesn't change any pvalues - just how they are
displayed. Since you are displaying -log10(p), a min of 2 will only show
pvalues that are .01 and a max of 3 will saturate the color scale
The minmax options are for thresholding. 1.3 means 10^-1.3 = 0.05 which
means that clusters with p.05 will be displayed. The max just sets the
maximum color scale. For CWP=.0009, -log10(CWP) = 3.0458, so any min
threshold less than that will show that cluster.
doug
On 04/30/2015 10:26 AM,
