Hi Laura - It appears that you're using a different configuration file
than the one you attached. To use Laura.txt, you should pass it as the
argument to the "-c" option (instead of
/scratch/lm618/tutorial_data/diffusion_tutorial).
Best,
a.y
On Sun, 8 Nov 2015, L. Moreno-Lopez wrote:
> Dear
Dear all,
I am facing an error at the configuration file for trac-all. I am trying to
run a single subject, for who there is a folder with all DWI DICOMs and a
folder with the recon-all processing (Freesurfer 5.3).
However, I am facing the following error, although no run list is
specified.
Hi Pedro - Looks like the mri_convert command has trouble reading your
dicoms. Have you searched for that error message in the archives of the
freesurfer list? If nobody has encountered it before, then you can post
this as an mri_convert question so that the appropriate people look at it.
a.y
> H
Hi,
Thank you a lot! It now ran, but exited with errors: ERROR: fMRIframe: frame >=
n frames
Can you help me?
Regards,
Pedro Rosa
[server:~/Desktop] pedrogomesrosa% trac-all -corr -c config
INFO: SUBJECTS_DIR is /Users/pedrogomesrosa/Desktop
INFO: Diffusion root is /Users/pedrogomesrosa/Deskt
Hi Pedro - Your config file needs to be a plain text file, not a rich text
format (rtf) file. If you run the cat command on your file, you'll see
that there are some formatting strings that were added by your text editor
in the beginning of the file and they include the curly brackets that give
you
Dear all,
I am facing an error at the configuration file for trac-all
I am trying to run a single subject, 148, for who there is a folder ‘148’ with
all DWI DICOMs and a folder ‘ESNA148’ with the recon-all processing (Freesurfer
5.3). Also in $SUBJECTS_DIR there is bval.bval and bvec.bvec.
I at
