Re: [Freesurfer] Using different atlas in aparcstats2table command

2016-12-14 Thread Martin Juneja
Hi Dr. Greve, Thanks for your reply. Could you please confirm once recon-all -all is done, following steps are correct to get cortical thickness, volume and area stats using Yeo atlas: (1). Use "-sval-annot" option to transfer annotation (Ref. https://mail.nmr.mgh.harvard.edu/pipermail//freesurf

Re: [Freesurfer] Using different atlas in aparcstats2table command

2016-12-14 Thread Douglas N Greve
You will need to create the yeo parcellation for each subject as well as run mris_anatomical_stats to create the stats file, then run aparcstats2table specifying the new stats file. Look in the recon-all.log file to see how to call mris_anatomical_stats On 12/14/2016 03:56 PM, Martin Juneja wr

[Freesurfer] Using different atlas in aparcstats2table command

2016-12-14 Thread Martin Juneja
Hi, I would like to use aparcstats2table command. By default, it uses Killiany/Desikan parcellation atlas. But I would like to use atlas by Yeo and colleagues ( https://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation_Yeo2011). Could you please let me know how can I use this atlas instead