Hi Doug,
So I am using a command like this:
epidewarp.fsl --mag ~/MonkeyfMRI/oz_fparc/fieldmap/003/fid_mag.nii --dph
~/MonkeyfMRI/oz_fparc/fieldmap/004/fid_phasediff.nii --exf
~/MonkeyfMRI/oz_fparc/bold/template.nii.gz --exfdw
~/MonkeyfMRI/oz_fparc/bold/b0dc.nii.gz --vsm vsm.nii.gz --tediff 2.46
Sorry, the b0dc.nii.gz should be the argument of --vsm (no need to use
--exfdw).
On 09/12/2014 08:28 AM, Reza Rajimehr wrote:
Hi Doug,
So I am using a command like this:
epidewarp.fsl --mag ~/MonkeyfMRI/oz_fparc/fieldmap/003/fid_mag.nii --dph
the commands I gave you will do this
On 09/06/2014 07:47 AM, Reza Rajimehr wrote:
I forgot to mention that I want to use undistorted EPI volumes for the
functional-anatomical registration.
Hi,
I have a basic question, but the answer can be useful for others as well.
I am doing a
On 09/06/2014 07:10 AM, Reza Rajimehr wrote:
Hi,
I have a basic question, but the answer can be useful for others as well.
I am doing a customized preprocessing of monkey functional data in FS-FAST
v5.3. After motion correction and before functional-anatomical
registration, I want to use
Hi,
I have a basic question, but the answer can be useful for others as well.
I am doing a customized preprocessing of monkey functional data in FS-FAST
v5.3. After motion correction and before functional-anatomical
registration, I want to use fieldmap data to correct spatial distortions
of EPI
I forgot to mention that I want to use undistorted EPI volumes for the
functional-anatomical registration.
Hi,
I have a basic question, but the answer can be useful for others as well.
I am doing a customized preprocessing of monkey functional data in FS-FAST
v5.3. After motion correction
Hi Reza,
On Sep 6, 2014, at 13:47 , Reza Rajimehr r...@nmr.mgh.harvard.edu wrote:
I forgot to mention that I want to use undistorted EPI volumes for the
functional-anatomical registration.
Well that is simple then, just undistorted the 3D EPI image you used as
template for motion
Hi Reza,
On Sep 6, 2014, at 13:10 , Reza Rajimehr r...@nmr.mgh.harvard.edu wrote:
Hi,
I have a basic question, but the answer can be useful for others as well.
I am doing a customized preprocessing of monkey functional data in FS-FAST
v5.3. After motion correction and before
