I see , so volumes are also surface based.
On Tue, 20 Feb 2018 at 23:16, Douglas N Greve
wrote:
> so this is thickness data? Hippocampus is a volume-based structure and
> so not represented on the surface
>
>
> On 02/20/2018 05:13 PM, amirhossein manzouri wrote:
> >
so this is thickness data? Hippocampus is a volume-based structure and
so not represented on the surface
On 02/20/2018 05:13 PM, amirhossein manzouri wrote:
> Hi ,
> This is the output of long_mris_slopes!
>
> On Tue, 20 Feb 2018 at 23:10, Douglas N Greve
>
Hi ,
This is the output of long_mris_slopes!
On Tue, 20 Feb 2018 at 23:10, Douglas N Greve
wrote:
> where did lh.testretest.volume-spc-10.stack.mgh? If this is an fsfast
> output, then use the aseg.mgz in fsaverage/mri.2mm
>
>
>
> On 02/16/2018 05:24 AM, amirhossein
where did lh.testretest.volume-spc-10.stack.mgh? If this is an fsfast
output, then use the aseg.mgz in fsaverage/mri.2mm
On 02/16/2018 05:24 AM, amirhossein manzouri wrote:
> Hi,
> To make the mask:
> mri_binarize --i aseg.mgz --match 17 --o Lhipp.mgh
>
> Run glmfit:
>
> cmdline mri_glmfit.bin
Hi,
To make the mask:
mri_binarize --i aseg.mgz --match 17 --o Lhipp.mgh
Run glmfit:
cmdline mri_glmfit.bin --osgm --glmdir
lh.testretest.volume-rate.fwhm10_LHipp --y
lh.testretest.volume-spc-10.stack.mgh --mask fsaverage/mri/Lhipp.mgh --surf
fsaverage lh
sysname Linux
FixVertexAreaFlag = 1
Can you send your glmfit command line and terminal output?
On 02/15/2018 07:21 AM, amirhossein manzouri wrote:
> Hi ,
> I did longitudinal analysis and now I made masks for Hippocampus and
> amygdala masks from fsavergae/mri/aseg.mgz using mri_binarize .I use
> the masks with mri_glmfit for
Hi ,
I did longitudinal analysis and now I made masks for Hippocampus and
amygdala masks from fsavergae/mri/aseg.mgz using mri_binarize .I use the
masks with mri_glmfit for volume_rate_stack but I get "dimensions mismatch
1 between y and mask" error .
I wonder:
1) How can I run analysis in