Re: [Freesurfer] annotation to volume with custom color scheme (Yeo parcellations)

ops. I guess that should have been obvious to me! Thanks! Dorit smime.p7s Description: S/MIME cryptographic signature ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The

Re: [Freesurfer] annotation to volume with custom color scheme (Yeo parcellations)

Hi Dorit, The reason why the colors look off is that mri_aparc2aseg will automatically add 1000 for left cerebral cortex and add 2000 for right cerebral cortex. Therefore, for example, a left hemisphere voxel in network 5 will have a value of 1005 in your test.mgz. Here is my suggestion: 1. Find

[Freesurfer] annotation to volume with custom color scheme (Yeo parcellations)

Hi, I’m trying to use the Yeo2011 annotations to create individual volume masks in subject space. I first use mri_surf2surf to map the annotations from fsaverage to individual subjects: mri_surf2surf --srcsubject fsaverage --trgsubject subject --hemi rh --sval-annot