Hi Amirhossein - The memory error doesn't occur when bbregister is
running, but when dmri_train is running and loading the atlas data. You
seem to have the snow leopard version of freesurfer installed, based on
your build stamp (freesurfer-Darwin-snowleopard-__i686-stable-pub-v5.3.0).
What
Hi ZeKe,
I am getting this error during Tracula procedure somewhere between
bbregister!
BR
On Jul 24, 2013 5:42 PM, Z K zkauf...@nmr.mgh.harvard.edu wrote:
Hello Amir,
According to the log file you've attached, recon-all finished to
completion without any errors. Are you sure you are
Hi Amirhossein - If your error happens when bbregister is run, then it's
not the error that the dmri_5.1_snow_leopard.tar.gz fix was meant to
address. In any case that fix is not relevant to you b/c you're using 5.3
and not 5.1. Can you please send your trac-all.log to establish where
Hi,
The content is : freesurfer-Darwin-snowleopard-i686-stable-pub-v5.3.0
Can it help?
On Mon, Jul 22, 2013 at 10:31 PM, Z K zkauf...@nmr.mgh.harvard.edu wrote:
Hello Amirhossein,
Can you please provide me with the contents of build-stamp.txt in the
/Applications/freesurfer directory?
Dear Anastasia,
I am trying to download the
dmri_5.1_snow_leopard.tar.gzftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/macos-snow-leopard-intel/dmri_5.1_snow_leopard.tar.gz
from
FreeSurfer website to solve memory problem but it is not available. Would
you please check the source to the
Hi Amirhossein - That fix applied only to the 5.1 version. I'd recommend
using the 5.3 version for tracula. Are you getting a memory error, and if
so with which version?
Thanks,
a.y
On Mon, 22 Jul 2013, amirhossein manzouri wrote:
Dear Anastasia,
I am trying to download the
Hi,
Yes I am getting the memory error with version 5.3, exactly the one that is
reported in this link:
https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-July/019392.html
Thanks,
On Mon, Jul 22, 2013 at 8:15 PM, Anastasia Yendiki
ayend...@nmr.mgh.harvard.edu wrote:
Hi Amirhossein -
Thanks Anastasia,
IT HELPED!
On Tue, Jul 16, 2013 at 5:25 PM, Anastasia Yendiki
ayend...@nmr.mgh.harvard.edu wrote:
Hi Amirhossein - I'm attaching sample files.
a.y
On Tue, 16 Jul 2013, amirhossein manzouri wrote:
Hi Anastasia,
I have tried both , 3-row and 3-column format and still
Good to hear! Can you please share with all of us what was wrong with your
original files? It may help others who have the same problem in the
future. Thanks!
On Wed, 17 Jul 2013, amirhossein manzouri wrote:
Thanks Anastasia,
IT HELPED!
On Tue, Jul 16, 2013 at 5:25 PM, Anastasia Yendiki
Hi Anastasia,
I have tried both , 3-row and 3-column format and still wrong bvecc and
bval from flip4fsl. Could you please send me a sample of your original
files so I can compare?
On Mon, Jul 15, 2013 at 7:44 PM, Anastasia Yendiki
ayend...@nmr.mgh.harvard.edu wrote:
Hi Amirhossein - Are
Hi Amirhossein - I'm attaching sample files.
a.y
On Tue, 16 Jul 2013, amirhossein manzouri wrote:
Hi Anastasia,
I have tried both , 3-row and 3-column format and still wrong bvecc and bval
from flip4fsl. Could you please send me a sample of your original files so I
can compare?
On Mon,
Dear Experts,
I am running trac-all -prep -c dmrirc on my DWI data. After flip4fsl step I
get the attached bval and bvec file which the bvec one is wrong so the
process exits with error in dtifit. I have also attached original bvec and
bval.
--
Best regards,
Amirhossein Manzouri
bvals
Hi Amirhossein - Are your original bvecs/bvals in 3-row format instead of
3-column format?
http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Tracula
Thanks,
a.y
On Mon, 15 Jul 2013, amirhossein manzouri wrote:
Dear Experts,
I am running trac-all -prep -c dmrirc on my DWI data. After
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