Gotcha, so you mean run mri_concat --conjunct on the original .mgh files first,
and then use mri_surfcluster to extract labels from the finalized .mgh.
By the way, mri_annotation2label works like a charm!
--
Yung-Jui Daniel Yang, PhD
Postdoctoral Researcher
Yale Child Study Center
New Haven, CT
Dear all,
Is there a way to convert .mgh to .label? My .mgh is a ROI file from qdec-based
group analysis and I don't want to draw the ROIs manually.
Thanks!
Daniel
--
Yung-Jui Daniel Yang, PhD
Postdoctoral Researcher
Yale Child Study Center
New Haven, CT
(203) 737-5454
Hi Daniel,
you can use mri_surfcluster.
br,
Gari
On Mon, Sep 9, 2013 at 8:25 PM, Yang, Daniel yung-jui.y...@yale.edu wrote:
Dear all,
Is there a way to convert .mgh to .label? My .mgh is a ROI file from
qdec-based group analysis and I don't want to draw the ROIs manually.
Thanks!
If you have run the correction for multiple comparisons, there should be
an annotation (.annot) file in the QDEC output directory (in the
contrast folder). You can convert that into labels using
mri_annotation2label. Otherwise use Gari's suggestion.
doug
On 09/09/2013 03:00 PM, Garikoitz
Thanks so much! I used the cluster analysis, I will look for the .annot there.
I am also performing a conjunction analysis. One question I have is that can I
perform mri_concat on those label files? I wanted to obtain the thickness value
from the regions from the conjunction analysis.
Thanks!
You cannot. You will have to do the conjunction on the cluster sig
files, then extract a label from that.
On 09/09/2013 06:30 PM, Yang, Daniel wrote:
Thanks so much! I used the cluster analysis, I will look for the .annot there.
I am also performing a conjunction analysis. One question I
