You can extract it with
mri_binarize --i aparc+aseg.mgz --match 1027 --o
ctx-lh-rostralmiddlefrontal.nii.gz
1027 comes from $FREESURFER_HOME/FreeSurferColorLUT.txt
On 1/17/19 11:31 AM, Stephanie Hare wrote:
>
> External Email - Use Caution
>
> Hi Doug,
>
> I converted the aparc+aseg.mgz
External Email - Use Caution
Dr. Greve,
Thank you for your swift reply. I will give this a try. I appreciate it.
Have a nice evening.
Best,
Stephanie
On Tue, Jan 15, 2019 at 4:50 PM Greve, Douglas N.,Ph.D. <
dgr...@mgh.harvard.edu> wrote:
> There should already be two volumes
There should already be two volumes (aparc+aseg.mgz and
aparc.a2009s+aseg.mgz) which you can simply convert to nifti with
mri_convert file.mgz file.nii.gz
On 1/15/19 2:14 PM, Stephanie Hare wrote:
>
> External Email - Use Caution
>
> Good afternoon,
>
> I'm new to Freesurfer; my
External Email - Use Caution
Good afternoon,
I'm new to Freesurfer; my background is resting-state fMRI using SPM. Years
back, left and right cortical thickness measures were calculated for our
sample of schizophrenia patients using the Desikan-Killiany atlas and were
input to an
