[Freesurfer] converting .thickness files of T1 MRI from FreeSurfer into AFNI

2014-01-06 Thread Muhammad Naveed Iqbal Qureshi
Hi, I want to know that how can I convert FreeSurfer .thickness files to AFNI readable format I tried the following Command but it gives error mri_convert /home/naveed/freesurfer/subjects/CHR01/surf/rh.thickness /media/Freesurfer_Data/Processed/AFNI_format/CHR/CHR01/rh.brik $Id:

Re: [Freesurfer] converting .thickness files of T1 MRI from FreeSurfer into AFNI

2014-01-06 Thread Bruce Fischl
Hi Muhammad try: set sdir=/home/naveed/freesurfer/subjects/CHR01/surf mris_convert -c $sdir/rh.thickness $sdir/rh.orig $sdir/rh.thickness.brik cheers Bruce On Mon, 6 Jan 2014, Muhammad Naveed Iqbal Qureshi wrote: Hi, I want to know that how can I convert FreeSurfer .thickness files to AFNI