Re: [Freesurfer] converting ME-MPRAGE files

We ran the following command, but the clarity improved minimally. Therefore, is there another command that you would recommend. Thanks, Gaurang On 6/9/16, 5:30 PM, "Douglas N Greve" wrote: >That tells you there is one "series" in that folder. The series here

Re: [Freesurfer] converting ME-MPRAGE files

That tells you there is one "series" in that folder. The series here means a volume, though there are many dicom files. dicomdir/mr_0006-e02/3d_t1_memprage-00533.dcm is just one in the series. To use this, you can run recon-all -s yoursubject -all -i

[Freesurfer] converting ME-MPRAGE files

Hello All, We have acquired our anatomical images on a Siemens scanner as multiecho MPRAGE sequence (4 echos), and wish to unpack the runs so we can perform morphometric analysis using FreeSurfer. What is the optimal way to convert the DICOM files so we can use them with FreeSurfer tools?