Re: [Freesurfer] cortical thickness values for each point in a ctx label file

2021-02-12 Thread Douglas N. Greve
, Donald N. *Sent:* Thursday, February 11, 2021 1:16 PM *To:* Freesurfer support list *Subject:* Re: [Freesurfer] cortical thickness values for each point in a ctx label file *External Email - Use Caution * Thanks for getting back so quickly, Doug. Creating pial label files will enable me

Re: [Freesurfer] cortical thickness values for each point in a ctx label file

2021-02-11 Thread Krieger, Donald N.
ilto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] cortical thickness values for each point in a ctx label file Not sure what you mean as the pial files are surfaces not labels or annotations. If you want to extract labels from the annotations you can use mri_annotation2label On 2/11/2021 12:55 PM,

Re: [Freesurfer] cortical thickness values for each point in a ctx label file

2021-02-11 Thread Krieger, Donald N.
thickness. From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Douglas N. Greve Sent: Thursday, February 11, 2021 1:04 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] cortical thickness values for each point in a ctx label file Not sure what you mean as the pial files

Re: [Freesurfer] cortical thickness values for each point in a ctx label file

2021-02-11 Thread Douglas N. Greve
Not sure what you mean as the pial files are surfaces not labels or annotations. If you want to extract labels from the annotations you can use mri_annotation2label On 2/11/2021 12:55 PM, Krieger, Donald N. wrote: External Email - Use Caution Dear freesurfer group, I wish to

[Freesurfer] cortical thickness values for each point in a ctx label file

2021-02-11 Thread Krieger, Donald N.
External Email - Use Caution Dear freesurfer group, I wish to measure a cortical thickness value for each entry in a label file, e.g. SubNo/wmparc/ctx-lh-lateraloccipital_1011.label . Is there a function in the freesurfer distribution which includes this capability? Also, is