[Freesurfer] creating 'Mid' surfaces

2013-02-14 Thread Ecker, Christine
Dear FreeSurfer Experts, What is the best way of creating surfaces approximating layer IV of the cortex or the 'mid' surface (I.e. Surface between grey and white matter). Thank you very much for your help. Regards, Christine ___ Freesurfer mailing

Re: [Freesurfer] creating 'Mid' surfaces

2013-02-14 Thread Bruce Fischl
Hi Christine we use mris_expand for this. E.g. from the surf dir mris_expand -thickness lh.white 0.5 lh.mid cheers Bruce On Thu, 14 Feb 2013, Ecker, Christine wrote: Dear FreeSurfer Experts, What is the best way of creating surfaces approximating layer IV of the cortex or the 'mid'

Re: [Freesurfer] creating 'Mid' surfaces

2013-02-14 Thread Shantanu Ghosh
Hi Christine, If you cd to the subject directory you can locate the ?h.white surface and use mris_expand command to do this. Hth, Shantanu On Thu, February 14, 2013 5:39 am, Ecker, Christine wrote: Dear FreeSurfer Experts, What is the best way of creating surfaces approximating layer IV of

Re: [Freesurfer] creating 'Mid' surfaces

2013-02-14 Thread Shantanu Ghosh
sorry the files are in the surf directory On Thu, February 14, 2013 9:53 am, Shantanu Ghosh wrote: Hi Christine, If you cd to the subject directory you can locate the ?h.white surface and use mris_expand command to do this. Hth, Shantanu On Thu, February 14, 2013 5:39 am, Ecker, Christine