Re: [Freesurfer] dmri_motion tracula timepoint to timepoint motion, or timepoint to reference?

Hi Ruth - It expects the output format of eddy_correct. It then computes the transforms between consecutive frames from the transforms between each frame and the reference frame. Best, a.y On Sun, 29 Nov 2015, Ruth Carper wrote: Hi,  I'm hoping to use the dmri_motion tool to quantify motio

[Freesurfer] dmri_motion tracula timepoint to timepoint motion, or timepoint to reference?

Hi, I'm hoping to use the dmri_motion tool to quantify motion for some diffusion data that did not use the eddy_correct tool.  We have registration matrices that we've successfully reformatted, but I've been scanning the FreeSurfer forum and see some conflicting information about whether the inp