Re: [Freesurfer] error message using mri_robust_template

2020-09-21 Thread Marisa Johanna Nordt
, Marisa Von: freesurfer-boun...@nmr.mgh.harvard.edu im Auftrag von Martin Reuter Gesendet: Freitag, 18. September 2020 13:27 An: Freesurfer support list Betreff: Re: [Freesurfer] error message using mri_robust_template Hi Marisa, the main goal

Re: [Freesurfer] error message using mri_robust_template

2020-09-18 Thread Martin Reuter
Hi Marisa, the main goal of robust_template is to remove rigid motion between scans. So the first question is, do you really need (want) affine? The next question is, if this still occurs in FS 7.1.1 I remember dimly that I worked on this some years ago (basically allow a larger threshold, as

[Freesurfer] error message using mri_robust_template

2020-09-16 Thread Marisa Nordt
External Email - Use Caution Hello, I am using mri_robust_template with the ‘--affine’ option to create individual templates (using freesurfer version freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c). For each timepoint I use that timepoint's T1.mgz as the input. For