From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Buckless, Colleen
<buckl...@kennedykrieger.org>
Sent: Wednesday, July 05, 2017 2:30 PM
To: 'freesurfer@nmr.mgh.harvard.edu'
Subject: Re: [Freesurfer] error message while usin
urfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Hoopes, Andrew
Sent: Wednesday, July 05, 2017 2:05 PM
To: 'freesurfer@nmr.mgh.harvard.edu'
Subject: Re: [Freesurfer] error message while using autorecon1
After sourcing freesurfer, what comes up if you run the command "which
nu_correct"
lt;freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Buckless, Colleen
<buckl...@kennedykrieger.org>
Sent: Wednesday, July 05, 2017 1:36 PM
To: 'freesurfer@nmr.mgh.harvard.edu'
Subject: Re: [Freesurfer] error message while using autorecon1
Hi Andrew,
The output list includes nu_co
: Re: [Freesurfer] error message while using autorecon1
Hi Colleen,
If you source freesurfer, and run:
ls $FREESURFER_HOME/mni/bin
It should output a list of mni tools, including nu_correct. Is this what you
see? There's a possibility that your mni sub-directory isn't sourced.
Andrew
...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Buckless, Colleen
<buckl...@kennedykrieger.org>
Sent: Wednesday, July 05, 2017 12:18 PM
To: 'freesurfer@nmr.mgh.harvard.edu'
Subject: [Freesurfer] error message while using autorecon1
Hi All,
I am using the ne
Hi All,
I am using the newest version of freesurfer, and I keep getting errors when I
run recon-all -autorecon1. It appears that the error might have to do with
nu_correct, and I have attached the recon-all.log.
Any suggestions on how to fix this?
Thanks,
Colleen Buckless
Research Assistant
