Re: [Freesurfer] error mris_anatomicalstats

2013-03-26 Thread Linn Mittlestein
Dear Bruce, I first used the example command line from the wiki: mri_annotation2label --subject LW \ --hemi rh --outdir ./labels(on my own subject) and then used mri_mergelabels -i lh.entorhinal.label -i lh.cuneus.label -o test.label I use Freesurfer 5.1 on Linux system. Are commands incorrect

Re: [Freesurfer] error mris_anatomicalstats

2013-03-26 Thread Bruce Fischl
Hi Linn what was your mris_anatomical_stats commandline? Bruce On Tue, 26 Mar 2013, Linn Mittlestein wrote: Dear Bruce, I first used the example command line from the wiki: mri_annotation2label --subject LW \ --hemi rh --outdir ./labels(on my own subject) and then used mri_mergelabels -i

[Freesurfer] error mris_anatomicalstats

2013-03-25 Thread Linn Mittlestein
Dear Freesurfer experts, I have a question about trying to extract statistics from merged labels using mris_anatomical_stats. I have used the mri_annotation2label, and then the mri_merge label, however now when trying to do mris_anatomical stats, I get the error ; could not read input volume, eg

Re: [Freesurfer] error mris_anatomicalstats

2013-03-25 Thread Bruce Fischl
Hi Linn can you send us the exact command line and screen output, and also what version and software/hardware environment you are running in? cheers Bruce On Mon, 25 Mar 2013, Linn Mittlestein wrote: Dear Freesurfer experts, I have a question about trying to extract statistics from merged