Re: [Freesurfer] extract values for significant cluster

2017-07-31 Thread Douglas Greve
lose or gain 3 mm per year in thickness in > this specific area? > > Thank you for you help! > Clara > > - Ursprüngliche Mail - > Von: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> > An: freesurfer@nmr.mgh.harvard.edu > Gesendet: Donnerstag, 2

Re: [Freesurfer] extract values for significant cluster

2017-07-28 Thread Clara Kühn
27. Juli 2017 19:10:50 Betreff: Re: [Freesurfer] extract values for significant cluster You can use mri_segstats specifying the ocn as the segmentation, the stack of thicknesses as the input, and --avgwf file.dat as the output. Make sure to add --excludeid 0 to exclude background voxels On 07/

Re: [Freesurfer] extract values for significant cluster

2017-07-27 Thread Douglas N Greve
You can use mri_segstats specifying the ocn as the segmentation, the stack of thicknesses as the input, and --avgwf file.dat as the output. Make sure to add --excludeid 0 to exclude background voxels On 07/27/2017 06:18 AM, Clara Kühn wrote: > Dear FreeSurfer experts, > > in the longitudinal 2

[Freesurfer] extract values for significant cluster

2017-07-27 Thread Clara Kühn
Dear FreeSurfer experts, in the longitudinal 2 stage model I find a difference in rate between my two groups in right intra parietal sulcus for surface area (survives MC correction). I would like to look at the cortical thickness in that same cluster. Is it possible to use any of the output