Re: [Freesurfer] fixing the talairach.xfm

2012-10-03 Thread Douglas Greve
Hi Eric, the talairach.xfm will not be overwritten. When run recon-all the first time, it creates two files: talairach.auto.xfm and talairach.xfm, which have the same contents. When you edit the registration, it changes the talairach.xfm. When recon-all is run again, it sees that the talairac

[Freesurfer] fixing the talairach.xfm

2012-10-03 Thread Eric Cunningham
Hi, I have a few very basic clarification questions regarding the recon-all processing pipeline. I am currently following the instructions here: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach Near the end of the page, it instructs me to rerun the whole process using my new talairach