Re: [Freesurfer] freesurfer 5.1

2017-04-11 Thread Z K
The current license is backwards compatible and should work. Can you send me a copy of your current license file TO MY DIRECT EMAIL ADDRESS and I will take a look? -Zeke On 04/11/2017 01:02 PM, Suchandra Thapa wrote: > Hi, > > I'm trying to support some users that want to use Freesurfer 5.1

[Freesurfer] freesurfer 5.1

2017-04-11 Thread Suchandra Thapa
Hi, I'm trying to support some users that want to use Freesurfer 5.1 for their workflow. How do I get a license file for this version? A license for the current versions doesn't seem to work. Suchandra Suchandra Thapa sth...@ci.uchicago.edu Computation Institute Searle Chemistry Laboratory

[Freesurfer] freesurfer 5.1 vs 5.2

2013-04-10 Thread Gonzalo Rojas Costa
Hi: How can install version 5.2 in a computer without uninstalling version 5.1 ?... Sincerely, -- Gonzalo Rojas Costa Laboratory for Advanced Medical Image Processing Department of Radiology ClĂ­nica las Condes Lo Fontecilla 441, Las Condes, Santiago, Chile. Tel: 56-2-2105170 Cel:

Re: [Freesurfer] freesurfer 5.1 vs 5.2

2013-04-10 Thread Louis Nicholas Vinke
Hi Gonzalo, You can untar the 5.2 files in a separate directory, and then just source the SetUpFreeSurfer.csh from the directory of the version of FreeSurfer you want to use. You can run 'which recon-all' to check which version you have sourced. -Louis On Wed, 10 Apr 2013, Gonzalo Rojas

Re: [Freesurfer] freesurfer 5.1 error: MPR2MNI305_TARGET: Undefined variable

2012-03-08 Thread Ian Charest
Hi Thanks guys for the reply, I have fixed this now. ian -Original Message- From: dgw [mailto:dgwake...@gmail.com] Sent: 07 March 2012 19:55 To: Nick Schmansky Cc: Ian Charest; freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] freesurfer 5.1 error: MPR2MNI305_TARGET

[Freesurfer] freesurfer 5.1 error: MPR2MNI305_TARGET: Undefined variable

2012-03-07 Thread Ian Charest
Hi When running recon-all I get the following error: ERROR: mpr2mni305 failed, see transforms/talairach_avi.log I called recon-all like so: recon-all -i /imaging/ic01/mridata/subject01/structurals/subject01.MR.SEQUENCE.0014.0001.2011.12.16.57.613319.8231038.IMA -all -subjid subject01 I

Re: [Freesurfer] freesurfer 5.1 error: MPR2MNI305_TARGET: Undefined variable

2012-03-07 Thread Ian Charest
2012 18:09 To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] freesurfer 5.1 error: MPR2MNI305_TARGET: Undefined variable Hi When running recon-all I get the following error: ERROR: mpr2mni305 failed, see transforms/talairach_avi.log I called recon-all like so: recon-all -i /imaging/ic01

Re: [Freesurfer] freesurfer 5.1 error: MPR2MNI305_TARGET: Undefined variable

2012-03-07 Thread Nick Schmansky
absolutely no problem in running the same process. ian From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Ian Charest Sent: 07 March 2012 18:09 To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] freesurfer 5.1 error

Re: [Freesurfer] freesurfer 5.1 error: MPR2MNI305_TARGET: Undefined variable

2012-03-07 Thread dgw
@nmr.mgh.harvard.edu Subject: [Freesurfer] freesurfer 5.1 error: MPR2MNI305_TARGET: Undefined variable Hi When running recon-all I get the following error: ERROR: mpr2mni305 failed, see transforms/talairach_avi.log I called recon-all like so: recon-all -i /imaging

[Freesurfer] Freesurfer 5.1 - ERROR: talairach_afd

2011-05-26 Thread Yiyu Chou
Dear Freesurfer Users, I tried the freesurfer 5.1 using command recon-all -i xxx -s xxx -all but I got an error message that didn't happen with version 5.0 on the same subject. ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** Is it normal ? YY

[Freesurfer] FreeSurfer 5.1

2011-03-09 Thread Alan Francis
Hi Bruce, Nick Doug: Any chance of FS 5.1 coming out in the near future? We have 2 longitudinal data sets that we are holding back till we have this installed. Thanks so much, Alan ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] FreeSurfer 5.1

2011-03-09 Thread Bruce Fischl
Hi Alan, yes, we are hoping by the end of the month. We are in our 2nd or 3rd round of testing and bug fixing, so hopefully it is converging. Bruce On Wed, 9 Mar 2011, Alan Francis wrote: Hi Bruce, Nick Doug: Any chance of FS 5.1 coming out in the near future? We have 2 longitudinal