Re: [Freesurfer] getting h/o atlas into individual surface (and then volume) space

2018-03-09 Thread Douglas Greve
Hi Dorit, I would probably run recon-all on the mni152, then map the atlas onto the surface of the mni (mri_vol2surf with --regheader), then create an annotation of the atlas using mris_seg2annot (run with --help for examples), then use mris_apply_reg to transfer the annot to your individual

[Freesurfer] getting h/o atlas into individual surface (and then volume) space

2018-03-06 Thread Dorit Kliemann
Hi, I’m trying to get an atlas (Harvard/Oxford sub) into individual space via surface registration. Motivation is to replicate a finding in volume space (functional data) in a normal population with that atlas in a lesion data set where transformation to template volume space is not feasible.