Re: [Freesurfer] head in a bad position in scanner

2023-03-27 Thread Douglas N. Greve
It might not be a registration issue. When you look at the orig.mgz compared to the rawavg.mgz, are parts of the head cut off in orig.mgz? Can you send a pic of the head orientation? On 3/17/2023 1:32 PM, Aaron Tanenbaum wrote: External Email - Use Caution We acquired some data this

[Freesurfer] head in a bad position in scanner

2023-03-17 Thread Aaron Tanenbaum
External Email - Use Caution We acquired some data this morning where the participant's head was in an unusual orientation. The participant has cervical dystonia. I have processed data like this before and freesurfer always fails. I am assuming Freesurfer is unable to register the