Re: [Freesurfer] if: Expression Syntax - preproc-sess with -nomc option

2024-02-17 Thread Stefano Delli Pizzi
t; > Best, > > Yujing > > From: freesurfer-boun...@nmr.mgh.harvard.edu > On Behalf Of Stefano Delli Pizzi > Sent: Tuesday, February 13, 2024 4:32 AM > To: Greve, Douglas N.,Ph.D. ; Freesurfer support list > > Subject: Re: [Freesurfer] if: Expression Syntax

Re: [Freesurfer] if: Expression Syntax - preproc-sess with -nomc option

2024-02-14 Thread Huang, Yujing
N.,Ph.D. ; Freesurfer support list Subject: Re: [Freesurfer] if: Expression Syntax - preproc-sess with -nomc option External Email - Use Caution Thank you. Stefano Binarizing based on threshold min1e-09 max+infinity binval1 binvalnot 0 fstart = 0, fend = 0

Re: [Freesurfer] if: Expression Syntax - preproc-sess with -nomc option

2024-02-13 Thread Stefano Delli Pizzi
External Email - Use Caution Thank you. Stefano Binarizing based on threshold min1e-09 max+infinity binval1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 149926 values in range Counting number of voxels in first frame Found 149925 voxels in final

Re: [Freesurfer] if: Expression Syntax - preproc-sess with -nomc option

2024-02-07 Thread Douglas N. Greve
Can you run it with -debug as the first option, capture the output, and send it to me? It will be a lot of output, so just capture it in a file and send the file, eg preproc-sess -debug -s subj -surface fsaverage lhrh -fwhm 0 -nomc -mni305 -fsd rest -per-run -sliceorder up -force | tee pps.log

[Freesurfer] if: Expression Syntax - preproc-sess with -nomc option

2024-01-22 Thread Stefano Delli Pizzi
External Email - Use Caution Hello FreeSurfer Developers, I'm attempting to run preproc-sess with -nomc option preproc-sess -s subj -surface fsaverage lhrh -fwhm 0 -nomc -mni305 -fsd rest -per-run -sliceorder up -force if: Expression Syntax. This error occurred before to