Eachoutput.nii.gz sess1/bold/analysis folder will have a dof.dat file
with a number in it. Add up all those numbers, create a files with the
sum in it, and pass that file to mrI_gomfit.
On 04/27/2015 06:18 PM, Reza Rajimehr wrote:
> Thanks Doug! Could you clarify a bit more on how to "add up th
Thanks Doug! Could you clarify a bit more on how to "add up the dofs
in each run"?
You can mri_concat the cesvar files. For the dof, just add up the dofs
in each run.
On Monday, April 27, 2015, Reza Rajimehr wrote:
> If I use mri_concat instead of isxconcat-sess, will I have all the necessa
You can mri_concat the cesvar files. For the dof, just add up the dofs
in each run.
On 04/27/2015 05:08 PM, Reza Rajimehr wrote:
> If I use mri_concat instead of isxconcat-sess, will I have all the necessary
> files for fixed-effects averaging by mri_glmfit? Specifically, can I generate
> cesva
If I use mri_concat instead of isxconcat-sess, will I have all the
necessary files for fixed-effects averaging by mri_glmfit?
Specifically, can I generate cesvar.nii for --yffxvar and ffxdof.dat
for --ffxdofdat in mri_glmfit?
Reza
I put it here:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outg
I put it here:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/isxconcat-sess
If you just want to concatenate the vertex values, then just do
something like
mri_concat --o output.nii.gz sess1/bold/analysis/contrast/ces.nii.gz
sess2/bold/analysis/contrast/ces.nii.gz ...
On 04/27
Thanks Doug! Could you put the updated isxconcat-sess script in an ftp
server and provide a link so that I can download it? I do not have
access to the dev environment.
Now I should run the command with the flag -trgsubject F99, right?
My analysis is on the surface, and I only want to concatena
I just fixed this for the dev environment. Try running it from there.
Though I think this is just the start of the problems.
doug
On 04/27/2015 01:01 AM, Reza Rajimehr wrote:
> Hi,
>
> I am trying to use isxconcat-sess for averaging functional data across
> two monkeys. The data in two monkeys h
Hi,
I am trying to use isxconcat-sess for averaging functional data across two
monkeys. The data in two monkeys have been analyzed on a common surface
(F99). When I run this:
isxconcat-sess -sf MonkeysList.txt -analysis movie2.task.rh -all-contrasts
-o group2
I get an error:
ERROR: cannot find
