[Freesurfer] likelihood of identical subcortical volumes

2013-07-08 Thread Satrajit Ghosh
hi, trying to figure out the likelihood of identical subcortical volumes across individuals. i'm noticing this in some data processed with FreeSurfer 5.1.0. just to give some probabilities - these are out of about 963 participants. and there are several such small clusters of identical numbers

Re: [Freesurfer] likelihood of identical subcortical volumes

2013-07-08 Thread Satrajit Ghosh
a quick update. the following fiddle will show the number of subjects that have an identical the same Right Amygdala volume. It simply plots a histogram of the counts per volume (scroll to the bottom of the result window). http://fiddle.jshell.net/satra/MXKY6/6/ cheers, satra On Mon, Jul 8,

Re: [Freesurfer] likelihood of identical subcortical volumes

2013-07-08 Thread Bruce Fischl
Hi Satra this seems vanishingly unlikely to me, particularly with partial volume correction. Have you visualize some of the subjects that have the same structure volume? Bruce On Mon, 8 Jul 2013, Satrajit Ghosh wrote: a quick update. the following fiddle will show the number of subjects that

Re: [Freesurfer] likelihood of identical subcortical volumes

2013-07-08 Thread Satrajit Ghosh
hi bruce, i visualized these two subjects using freeview and nothing looked out of the ordinary. $ cat /mindhive/xnat/surfaces/adhd200/3684229/stats/aseg.stats | grep -i amy 13 18 1764 1764.0 Left-Amygdala 64.7514 7.583136.90.54. 28 54

Re: [Freesurfer] likelihood of identical subcortical volumes

2013-07-08 Thread Bruce Fischl
I believe it does, although the integral values are a bit suspicious. Maybe Doug or Nick knows? On Mon, 8 Jul 2013, Satrajit Ghosh wrote: hi bruce, i visualized these two subjects using freeview and nothing looked out of the ordinary. $ cat