Re: [Freesurfer] lobes volume (WM and GM)

2017-09-22 Thread Douglas N Greve
https://www.ncbi.nlm.nih.gov/pubmed/19027860 On 09/22/2017 10:11 AM, Gonzalo Rojas Costa wrote: > Hi Douglas: > >I am looking for that paper, but I couldn't found it... Which is it ? > >Sincerely, > > > Gonzalo Rojas Costa > Gonzalo Rojas Costa > Laboratory for Advanced Medical Image

Re: [Freesurfer] lobes volume (WM and GM)

2017-09-22 Thread Gonzalo Rojas Costa
Hi Douglas: I am looking for that paper, but I couldn't found it... Which is it ? Sincerely, Gonzalo Rojas Costa Gonzalo Rojas Costa Laboratory for Advanced Medical Image Processing Department of Radiology Clínica las Condes Lo Fontecilla 441, Las Condes, Santiago, Chile. Tel: 56-2-2105170

Re: [Freesurfer] lobes volume (WM and GM)

2017-09-21 Thread Douglas N Greve
No, not for lobe volume. Have you seen the original wmparc paper? On 09/20/2017 04:53 PM, Gonzalo Rojas Costa wrote: > Hi Douglas: > >I am looking for papers that used the volume of each lobe computed > using freesurfer, but I couldn't found it... Do you know any?... > >Sincerely, > > >

Re: [Freesurfer] lobes volume (WM and GM)

2017-09-20 Thread Gonzalo Rojas Costa
Hi Douglas: I am looking for papers that used the volume of each lobe computed using freesurfer, but I couldn't found it... Do you know any?... Sincerely, Gonzalo Rojas Costa Laboratory for Advanced Medical Image Processing Department of Radiology Clínica las Condes Lo Fontecilla 441, Las

Re: [Freesurfer] lobes volume (WM and GM)

2017-09-20 Thread Douglas N Greve
We did not have a strong reason, just that it seemed to give maps that looked reasonable On 09/20/2017 04:42 PM, Gonzalo Rojas Costa wrote: > Hi Douglas: > >Why you specified 5mm as the default value for the --wmparc-dmax > option in mri_aparc2aseg command? > >Sincerely, > > > Gonzalo

Re: [Freesurfer] lobes volume (WM and GM)

2017-09-20 Thread Gonzalo Rojas Costa
Hi Douglas: Why you specified 5mm as the default value for the --wmparc-dmax option in mri_aparc2aseg command? Sincerely, Gonzalo Rojas Costa Laboratory for Advanced Medical Image Processing Department of Radiology Clínica las Condes Lo Fontecilla 441, Las Condes, Santiago, Chile. Tel:

Re: [Freesurfer] lobes volume (WM and GM)

2017-09-14 Thread Gonzalo Rojas Costa
Hi Douglas: By removing --rip-unknown I got the same results... Why ?... Sincerely, Gonzalo Rojas Costa > Date: Tue, 12 Sep 2017 12:33:11 -0400 > From: Douglas N Greve <gr...@nmr.mgh.harvard.edu> > Subject: Re: [Freesurfer] lobes volume (WM and GM) > To: freesurfer@n

Re: [Freesurfer] lobes volume (WM and GM)

2017-09-12 Thread Bruce Fischl
Hi Gonzalo I don't think "wm for a lobe" is well-defined once you get into the deep wm Bruce On Tue, 12 Sep 2017, Gonzalo Rojas Costa wrote: Hi: I need the complete WM volume for each lobe... not only the WM up to 5mm beneath the lobes (default value) or 20 mm... Sincerely, Gonzalo

Re: [Freesurfer] lobes volume (WM and GM)

2017-09-12 Thread Douglas N Greve
Try removing the --rip-unknown On 09/12/2017 11:09 AM, Gonzalo Rojas Costa wrote: > Hi: > >I created the following script (for freesurfer 5.3.0) to compute the > lobes volume (including GM and WM). > >mri_annotation2label --subject pac --hemi rh --lobesStrict lobulos > --seg lobulos

[Freesurfer] lobes volume (WM and GM)

2017-09-12 Thread Gonzalo Rojas Costa
Hi: I need the complete WM volume for each lobe... not only the WM up to 5mm beneath the lobes (default value) or 20 mm... Sincerely, Gonzalo Rojas Costa Laboratory for Advanced Medical Image Processing Department of Radiology Clínica las Condes Lo Fontecilla 441, Las Condes, Santiago,