Re: [Freesurfer] longitudinal hippocampal aseg editing

2018-09-25 Thread Martin Reuter
Hi Rebecca, I see. Generally, it should behave in the same way as cross sectional processing: If both aseg.mgz and aseg.auto.mgz exist, and they are different, thenĀ  the file aseg.manedit.mgz is created from the differences (and if anĀ  aseg.manedit.mgz file also exists, then its contents are

[Freesurfer] longitudinal hippocampal aseg editing

2018-09-07 Thread Rebecca Ray
External Email - Use Caution Martin, That is the point. I have edited the hippocampus in the -long 2 times and the recon does not maintain my edits. I would love any help to changes I should be making to my recon statement to maintain my edits. Rebecca Hi Rebecca, aseg

[Freesurfer] longitudinal hippocampal aseg editing

2018-09-06 Thread Rebecca Ray
External Email - Use Caution I have 2 time points on 60 subjects with most being in some form of AD. There are considerable differences in hippocampal volume between time points. I edited the raw images before making the template. I then had to edit the aseg template image and