Hi all,
Did you encounter the error message talairach.m3z does not start as 'MNI
Transform File' when making average of subjects?
I checked all the recon-all.log file and did not find error, but when
running make_average_subject after recon-all, then this error shoot.
To repeat the error
This error may come from regio_read_mincxfm function in registerio.c.
Does this mean something wrong in recon-all?
I forgot to mention that FreeSurfer version is
freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
On Thu, Mar 7, 2013 at 5:34 PM, Xiaowei Song dawnwei.s...@gmail.com wrote:
Hi
sorry, I don't understand. What was the error? I don't see one in this
email. Can you send us the actual screen output?
cheers
Bruce
On Thu, 7 Mar 2013, Xiaowei Song wrote:
This error may come from regio_read_mincxfm function in registerio.c.Does
this mean something wrong in recon-all?
I
Sorry, I did not make it clear.
In make_average_volume.log, the error message is:
1/139 1173622 aseg Sat Feb 23 02:26:02 EST 2013
mri_vol2vol --mov /data/lis9/fs/x/1173622/mri/aseg.mgz --targ
/usr/local/freesurfer/average/mni305.cor.mgz --xfm
/data/lis9/fs/x/1173622/mri/transforms/talairach.m3z
what was your command line?
On Thu, 7 Mar 2013, Xiaowei Song wrote:
Sorry, I did not make it clear.
In make_average_volume.log, the error message is:
1/139 1173622 aseg Sat Feb 23 02:26:02 EST 2013
mri_vol2vol --mov /data/lis9/fs/x/1173622/mri/aseg.mgz --targ
Thanks for your help.
My command line is
make_average_subject --out avgGrp139 --subjects `cat
script/subjects.id` --xform
talairach.m3z
On Thu, Mar 7, 2013 at 6:15 PM, Bruce Fischl fis...@nmr.mgh.harvard.eduwrote:
what was your command line?
On Thu, 7 Mar 2013, Xiaowei Song wrote:
The xform has to be linear in the xfm format. The m3z cannot be used.
doug
On 03/07/2013 06:44 PM, Xiaowei Song wrote:
Thanks for your help.
My command line is
make_average_subject --out avgGrp139 --subjects `cat
script/subjects.id http://subjects.id` --xform talairach.m3z
On Thu, Mar 7,
Thank you, doug, I will try xfm!
On Thu, Mar 7, 2013 at 7:03 PM, Douglas N Greve
gr...@nmr.mgh.harvard.eduwrote:
The xform has to be linear in the xfm format. The m3z cannot be used.
doug
On 03/07/2013 06:44 PM, Xiaowei Song wrote:
Thanks for your help.
My command line is
