Hi Daniel, what is this in reference to? If this is a follow up on a
previous thread, please include the rest of the thread and the file in
the same email. I go through way too many emails to keep track of who's
doing what. thanks!
doug
On 10/23/13 4:13 AM, Daniel Ferreira wrote:
Dear Dou
Dear Douglas,
Please, find attached aseg.stats files for subj1 and subj2.
Thanks
Daniel
aseg.stats_subj2
Description: Binary data
aseg.stats_suj1
Description: Binary data
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Can you send the aseg.stats file for subj1 and subj2?
On 10/08/2013 07:53 AM, Daniel Ferreira wrote:
> Dear Douglas,
>
> I generated my table with version 5.3.
>
> Attached is an example for two subjects (in .txt and .xls formats).
>
> Best regards
>
> Dani
>
>
>
>
Dear Douglas,
I generated my table with version 5.3.
Attached is an example for two subjects (in .txt and .xls formats).
Best regards
Dani
Measure:volume Left-Lateral-Ventricle Left-Inf-Lat-Vent
Left-Cerebellum-White-MatterLeft-Cerebellum-Cortex Left-Thalamus-Proper
Left-Cauda
what version was the table generated with? 5.3 does not use ICV in the
table anymore. It uses eTIV. Can you send an example of one of your tables?
On 10/07/2013 03:12 AM, Daniel Ferreira wrote:
> Dear Douglas and Martin,
>
> Thanks for your replies.
>
> So far I have always been able to get eTIV
Dear Douglas and Martin,
Thanks for your replies.
So far I have always been able to get eTIV when running asegstats2table
(last column on the spreadsheet). But my current FreeSurfer version (5.3.0)
is not grabbing it.
I can found eTIV in the header and extract it for all the subjects with
mri_se
Message: 7
Date: Wed, 02 Oct 2013 10:32:51 -0300
From: Marcos Martins da Silva mailto:marc...@hucff.ufrj.br>>
Subject: Re: [Freesurfer] missing eTIV in asegstats2table
To: Daniel Ferreira mailto:dani...@ull.es>>
Cc:freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.
lot
Dani
Message: 7
Date: Wed, 02 Oct 2013 10:32:51 -0300
From: Marcos Martins da Silva
Subject: Re: [Freesurfer] missing eTIV in asegstats2table
To: Daniel Ferreira
Cc: freesurfer@nmr.mgh.harvard.edu
Message-ID: <1380720771.1845.9.camel@alien>
Content-Type: text/plain; charset="utf-
th "mri_segstats", but what I get
> is individual values for all my subjects in the terminal, so it is
> quite boring to pass all the values to a table.
>
> Thanks a lot,
>
> Dani
>
>
>
> Message: 1
> Date: Tue, 01 Oct 2013 11:58:57 -0400
>
ual values for all my subjects in the terminal, so it is
> quite boring to pass all the values to a table.
>
>
> Thanks a lot,
>
>
> Dani
>
>
>
>
>
>
> Message: 1
> Date: Tue, 01 Oct 2013 11:58:57 -0400
> From: Douglas N Greve
013 11:58:57 -0400
From: Douglas N Greve
Subject: Re: [Freesurfer] missing eTIV in asegstats2table
To: freesurfer@nmr.mgh.harvard.edu
Message-ID: <524af141.3060...@nmr.mgh.harvard.edu>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed
It should still be there. I changed the name
It should still be there. I changed the name to
EstimatedTotalIntraCranialVol, eg the line now looks like
# Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total
Intracranial Volume, 1509814.835086, mm^3
On 10/01/2013 10:50 AM, Daniel Ferreira wrote:
> Hi,
>
> I just run my first asegs
Hi,
I just run my first asegstats2table in version 5.3 of FS. Is not eTIV
included in the generated file anymore?
I know that I can get eTIV with mri_segstats --subject subjid --etiv-only but,
is it any way to get the values for all my subjects in a text file as
asegstas2table does?
Thanks a lot
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